Welcome to idtracker.ai’s documentation!¶
idtracker.ai allows to track groups of animals in videos recorded in laboratory conditions.
When using information from this web page please reference
Romero-Ferrero, F., Bergomi, M.G., Hinz, R.C., Heras, F.J.H., de Polavieja, G.G., (2018). idtracker.ai: Tracking all individuals in large collectives of unmarked animals (submitted) (F.R.-F. and M.G.B. contributed equally to this work. Correspondence should be addressed to G.G.d.P: firstname.lastname@example.org)
You can find the arXiv version in the following link: https://arxiv.org/abs/1803.04351.
The source code can be found in https://gitlab.com/polavieja_lab/idtrackerai.git. Report any problem by opening an issue in the repository.
Should you need more information please contact us (email@example.com).
- Some videos tracked with idtracker.ai
- Installation and requirements
- Step 1. Download the video example
- Step 2. Copy video to an adequate location
- Step 3. Start a tracking session
- Step 4. Select a region of interests
- Step 5. Video segmentation and preprocessing
- Step 6. Start tracking the video
- Step 7. Global and individual validation
- Step 8. Output files
- Try the 100 zebrafish sample video
- Graphical user interface (GUI)
- Code documentation
- Collectives videos library
- Individual images library