idtrackerai

Welcome to idtracker.ai’s documentation!

idtracker.ai allows to track groups of up to 100 unmarked animals from videos.

_images/fish_tracked.png _images/flies_tracked.png _images/14ants.png _images/mice.png _images/2fish.png

Installation and git repository

The source code and installation instructions can be found at https://gitlab.com/polavieja_lab/idtrackerai.git.

Quickstart

Check out the Quickstart to learn how to use the software.

Video conditions

Check out the General video conditions to get some advice in how to create videos that will give you the best tracking results with idtracker.ai.

Frequently Asked Questions (FAQs)

We have summarized in the FAQs some of the questions that we get more often.

Trajectory analysis

We provide a set of Jupyter Notebooks for analysis of the trajectories that idtracker.ai outputs.

Code documentation

idtracker.ai is opensource and free software (both as in freedom and as in free beer). We have documented the code so that it is easier for developers to modify it to their needs.

idmatcher.ai matches identities between videos

We have also developed a toolbox to match identities between videos, called idmatcher.ai.

References

When using information from this web page please reference

Find here the preprint version of the manuscript.

Data

The data used in the article can be found in the Data section of this webpage.